events //

Workshop 'Introduction to RAD data analysis

Taking place on September 24-26, 2014, this short course by Alan Brelsford, Univ. Lausanne, will cover the following topics:

 

  • Introduction to Unix command-line environment
  • Demultiplexing and quality control of raw sequence data
  • Analysis of GBS/RAD data without a reference genome using Stacks
  • Analysis of GBS/RAD data with a reference genome using Bowtie/Samtools
  • Export and quality filtering of raw genotypes using Vcftools
  • Brief student presentations and discussion on their current or future genotyping-by-sequencing projects